PTM Viewer PTM Viewer

AT5G38600.1

Arabidopsis thaliana [ath]

Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein

12 PTM sites : 1 PTM type

PLAZA: AT5G38600
Gene Family: HOM05D002617
Other Names: NULL
Uniprot
Q93YW4

Link out to other resources with this protein ID : TAIR   |   PeptideAtlas   |   ARAPORT   |   PhosPhAt

For each protein all PTMs are highlighted by default in the respective protein sequence (right-hand side). One can adjust a selection of PTMs in the PTM table on the left-hand side. In addition, functional protein domains and sites can be underlined if desired.

In the PTM table per PTM the PTM position and type is indicated, as well as the plain peptide sequence that was identified by mass spectrometry. The respective proteomics study is indicated by a number, providing a link to consult the experimental details. Additional PTM meta-data includes various confidence measures such as peptide score provided by search algorithms, posterior error probability (PEP), precursor mass deviation (in ppm) and modification site probability. The available confidence meta-data can be consulted in the extended PTM table by clicking SHOW CONFIDENCE. However, in the default PTM table, a color-coding of confidence is provided with green indicating high confidence, olive medium confidence, grey low confidence, and no color an unassigned confidence. More details regarding this confidence assignment can be consulted in the tutorial or the Plant PTM Viewer manuscript.

Besides confidence measures, log2 fold changes between two conditions with significance values (P- or Q-values) are shown if provided in the respective publication. Log2 fold changes are colored in heatmap-like gradient (green = induced, red = repressed) and significant values are highlighted in green. To determine significance, we employed the threshold used in the respective publication. For more details on the quantitative measurements we refer to the experimental details and respective publication, as methodologies can differ.

On the bottom of the page one can send the whole protein or a part of the protein (i.e. a functional domain) to PTM Blast. This will display aligned protein sequences that potentially report aligned PTMs.

PTMs



PTM Type

Mod AA

Pos

Peptide

Exp ID

Conf
ph S 23 KNSLESGNGSPEANSLVGNDENVK61a
ph S 26 KNSLESGNGSPEANSLVGNDENVK61a
NSLESGNGSPEANSLVGNDENVK83
106
114
ph S 30 NSLESGNGSPEANSLVGNDENVK59
83
84a
85
88
100
106
109
111a
111b
111c
111d
114
ph S 35 NSLESGNGSPEANSLVGNDENVK83
114
ph S 363 EEIESEDGEILEK28
38
44
59
83
88
106
109
111a
111b
111c
111d
114
ph Y 451 YDYGYGSNEYGSR66
ph Y 453 YDYGYGSNEYGSR66
ph S 455 YDYGYGSNEYGSR66
114
ph Y 458 YDYGYGSNEYGSR66
ph S 460 YDYGYGSNEYGSR66
114
ph S 462 SRSPGIDR88
ph S 464 YDYGYGSNEYGSRSRSPGIDR100
SRSPGIDR38
60
88
111a
111b
111c
111d
114

Sequence

Length: 532

METEDVLDIPASSNFGSEVKKNSLESGNGSPEANSLVGNDENVKGNLDLDLTEENLRIVGGQESGEILTEQVSDVFNASVESVAVDEKLGIQKETLVHSTTLDVSSKAGVKRPRTSYDEQQPTVHVTYKHLTRASKQKLESLLQKWSEWEAENTSLAQDQEQLFESGEETCFPAIRVGLQKTSSVSFWIDNQTGHKPLEDFVLVESSTTPLYDRKFAIGLNSADGSRNVEGGLEIIDDDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSGPRLPSRYYQKTQTGKYDGLKPGTLDAETRQLLNLGELDPPPWLNRMREIGYPPGYLAPEDDHLSGITIFGEEVETREEIESEDGEILEKANHPPEPQMKKTVEFPGINAPFPENADEWLWEAAPSHRNSSRSGRWQQQKTSRGHDYRDDGPLGVEPSSYPPRYGSRYDYGYGSNEYGSRSRSPGIDRSLSERSKRDYSSYDADFRERDRDRDRNRDRDRDRDWDRDRDRDCDRDRDRDDRDWSYRLSSRR

ID PTM Type Color
ph Phosphorylation X

Domains & Sites

Clear highlighted range 
Interpro Domains
Show IPR ID From To
IPR001878 242 258
IPR006568 298 350

BLAST


Perform a BLAST search for this sequence, or a part of this sequence (minimum 50 characters)
A downloadable tutorial can be found here